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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_708176_709315_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
708176 - 709315
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTTCTTAACT
Flanking Amino Acid:
SDESYPYMAQNGTCQYNVST
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
67.1
0.38
1.1
60.4
44.8
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
87.2
1.25
1
95.32
31.5

Associated Gene:

Gene:
CTSS
Ensembl Gene ID:
ENSAPLG00000012624
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013159
706982 - 710691
3710