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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_710433_710565_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
710433 - 710565
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
GGTTTGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CTGCCCACCACA
Flanking Amino Acid:
KAHGKEYRHQKEEGERRVTW
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
73.7
0.53
1
69.2
46.1
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
42.4
-0.6
2.1
53.99
44.2

Associated Gene:

Gene:
CTSS
Ensembl Gene ID:
ENSAPLG00000012624
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013159
706982 - 710691
3710