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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_716002_716053_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
716002 - 716053
Intron Length:
52

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATATCAA
5'SS Class:
major
3'SS Sequence:
CCATACCTTTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
GTGTCCATACCT
Flanking Amino Acid:
TEADLGEKPQLAMNHLGDMT
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
62.9
37.1
Major BPS
64.9
0.37
1
67
29.8
Major PPT
51.9
0.04
1.7
61.8
39.4
Minor 5ss
40.7
-1
2.9
48.8
41.9
Minor BPS
57.8
0.32
2
77.78
44.2

Associated Gene:

Gene:
CTSK
Ensembl Gene ID:
ENSAPLG00000012768
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013312
714743 - 717575
2833