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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_722310_722796_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
722310 - 722796
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CCCTCTTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGAAAA
U12 Branch Point Sequence:
CCCTCTTGAACA
Flanking Amino Acid:
PNLASRGTGFTTEAAQTPTP
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.8
34.6
Major BPS
50.2
0.01
1.1
57.3
36.3
Major PPT
67.8
0.4
1
64.2
35.4
Minor 5ss
32.8
-2
2.7
40.4
39.1
Minor BPS
60.2
0.32
1.5
63.35
43.5

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029890
721487 - 742045
20559
ENSAPLT00000024035
721487 - 741925
20439
ENSAPLT00000014009
721487 - 741925
20439
ENSAPLT00000042292
721487 - 742045
20559