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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_722957_723580_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
722957 - 723580
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAAAG
5'SS Class:
major
3'SS Sequence:
TGTTGTCGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TCCTCTCCCATT
Flanking Amino Acid:
PGTRPPFTPQQVASQTVKTR
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
62.5
43.8
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
76.2
0.59
1
73.5
41.8
Minor 5ss
37
-1.5
3.2
48
47.7
Minor BPS
42.3
-0.5
2.1
59.92
44.5

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024035
721487 - 741925
20439
ENSAPLT00000014009
721487 - 741925
20439
ENSAPLT00000042292
721487 - 742045
20559
ENSAPLT00000029890
721487 - 742045
20559