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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_725204_725589_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
725204 - 725589
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCTA
5'SS Class:
strong_major
3'SS Sequence:
TACCTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ACACTTGTACCT
Flanking Amino Acid:
ESLSGYDHSQVPVQPVTAAG
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
80.4
34.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.1
0.57
0.9
65.4
40.8
Minor 5ss
37.2
-1.5
3.1
49.8
46.4
Minor BPS
41.8
-0.5
2.1
55.4
41.1

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042292
721487 - 742045
20559
ENSAPLT00000029890
721487 - 742045
20559
ENSAPLT00000024035
721487 - 741925
20439
ENSAPLT00000014009
721487 - 741925
20439