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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_725669_727738_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
725669 - 727738
Intron Length:
2070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
CTTTCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTCCTGTTACA
Flanking Amino Acid:
EYIICTNTNVKQQQPPQQTE
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.2
0.75
0.7
81.9
28.4
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
47.4
-0.2
2.3
64.3
42.1

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024035
721487 - 741925
20439