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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_729359_729529_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
729359 - 729529
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTGTCTTACCT
Flanking Amino Acid:
FCLVAIGRLQVTSSPNCTDM
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
83.6
0.76
0.8
77.4
31
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
63
0.49
1.7
79.89
42.3

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042292
721487 - 742045
20559
ENSAPLT00000029890
721487 - 742045
20559
ENSAPLT00000024035
721487 - 741925
20439
ENSAPLT00000014009
721487 - 741925
20439