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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_729607_730046_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
729607 - 730046
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
ACTCCCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTGCTGGAATT
Flanking Amino Acid:
TGYIKAWPPAGVSLPDDDPD
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
76.1
0.59
0.8
72.9
31.1
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
49.3
0.03
2.2
76.06
41.4

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014009
721487 - 741925
20439
ENSAPLT00000042292
721487 - 742045
20559
ENSAPLT00000029890
721487 - 742045
20559
ENSAPLT00000024035
721487 - 741925
20439