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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_732311_732467_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
732311 - 732467
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTTGCCT
5'SS Class:
weak_major
3'SS Sequence:
GTTGTGAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
CTGTTGTGAATG
Flanking Amino Acid:
TYKPSFLTDQELKHLILEAA
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.3
52.4
44.1
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
66.7
0.38
1.1
59.5
45.2
Minor 5ss
35
-1.7
3.2
49.4
46.3
Minor BPS
45.2
-0.5
2.2
50.93
44.2

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014009
721487 - 741925
20439
ENSAPLT00000042292
721487 - 742045
20559
ENSAPLT00000029890
721487 - 742045
20559
ENSAPLT00000024035
721487 - 741925
20439