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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_735208_737934_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
735208 - 737934
Intron Length:
2727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTAGCTTAGCT
Flanking Amino Acid:
PMPNDKERFARSDDEQSSAD
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
61.4
0.44
2.1
84.9
41.5

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042292
721487 - 742045
20559
ENSAPLT00000029890
721487 - 742045
20559
ENSAPLT00000024035
721487 - 741925
20439