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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_737980_739173_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
737980 - 739173
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAC
U12 Branch Point Sequence:
TTTTTTTTTCTT
Flanking Amino Acid:
DDGEGNSKFLRCDDDPMPND
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
53.3
0.08
1.1
61.3
34.4
Major PPT
72.5
0.51
0.7
64.9
30.7
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
43.7
-0.4
3.5
78.47
38.5

Associated Gene:

Gene:
ARNT
Ensembl Gene ID:
ENSAPLG00000013397
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029890
721487 - 742045
20559
ENSAPLT00000024035
721487 - 741925
20439
ENSAPLT00000014009
721487 - 741925
20439
ENSAPLT00000042292
721487 - 742045
20559