Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_739754_741816_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

739754 - 741816

Intron Length:

2063

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

CCCTCCTGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

ACACTCTTACGG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

1.1

77.4

37.4

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

70.1

0.45

0.9

68.5

31.8

Minor 5ss

40.4

-1.1

2.8

53.8

42.8

Minor BPS

43.8

-0.6

1.9

43.16

42.3

Associated Gene:

Gene:

ARNT

Ensembl Gene ID:

ENSAPLG00000013397

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029890

721487 - 742045

20559

ENSAPLT00000024035

721487 - 741925

20439

ENSAPLT00000014009

721487 - 741925

20439

ENSAPLT00000042292

721487 - 742045

20559