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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_752034_752377_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
752034 - 752377
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TTTGCTGTATCT
Flanking Amino Acid:
HVDRLFDDASRAIDKCEILV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
49.9
0.08
2.3
79.06
43.7

Associated Gene:

Gene:
SETDB1
Ensembl Gene ID:
ENSAPLG00000013908
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030008
750878 - 768802
17925
ENSAPLT00000027511
750878 - 768802
17925
ENSAPLT00000014499
750878 - 768802
17925