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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_753107_753242_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
753107 - 753242
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTCTTTATCT
Flanking Amino Acid:
NPKIVKDQTLLREAMAAMRK
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.3
0.82
0.7
84.4
23.5
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
73.4
0.81
1.5
87.39
38.7

Associated Gene:

Gene:
SETDB1
Ensembl Gene ID:
ENSAPLG00000013908
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030008
750878 - 768802
17925
ENSAPLT00000027511
750878 - 768802
17925
ENSAPLT00000014499
750878 - 768802
17925