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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_753933_754244_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
753933 - 754244
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
AAATGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TTCTATTGAGCT
Flanking Amino Acid:
KGTLIAIQPVGAGKKYKVKF
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
68.4
42.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
71.7
0.49
1
66.8
43.9
Minor 5ss
43.4
-0.7
2.8
60.7
43.6
Minor BPS
50.2
0.08
1.9
73.75
43

Associated Gene:

Gene:
SETDB1
Ensembl Gene ID:
ENSAPLG00000013908
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030008
750878 - 768802
17925
ENSAPLT00000027511
750878 - 768802
17925
ENSAPLT00000014499
750878 - 768802
17925