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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_755796_756152_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
755796 - 756152
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
CCTTTCTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CCTTTCTGAACA
Flanking Amino Acid:
EWELYPICRPLKKTWEDIED
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
77.5
32.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.3
0.5
1
68.9
35.9
Minor 5ss
30.3
-2.3
3.2
39.2
39.9
Minor BPS
66.6
0.52
1.5
71.44
41

Associated Gene:

Gene:
SETDB1
Ensembl Gene ID:
ENSAPLG00000013908
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030008
750878 - 768802
17925
ENSAPLT00000027511
750878 - 768802
17925
ENSAPLT00000014499
750878 - 768802
17925