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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_757349_757707_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
757349 - 757707
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCACACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TCTTCTTCCACA
Flanking Amino Acid:
SGQARTRPNVGAVRSKGPVV
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77.1
34.1
Major BPS
67.6
0.44
1.2
75
40
Major PPT
67.4
0.39
0.9
60.9
35.1
Minor 5ss
51.3
0.05
2.4
67
44.2
Minor BPS
55.6
0.17
2
71.01
41.7

Associated Gene:

Gene:
SETDB1
Ensembl Gene ID:
ENSAPLG00000013908
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027511
750878 - 768802
17925
ENSAPLT00000014499
750878 - 768802
17925
ENSAPLT00000030008
750878 - 768802
17925