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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_757847_760359_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
757847 - 760359
Intron Length:
2513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTCCCTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
TGCAAATCACCT
Flanking Amino Acid:
RSISPQLAEMECSDSQLAQS
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
80
0.68
0.9
76
32.5
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
39.7
-0.7
2.1
56.3
45.1

Associated Gene:

Gene:
SETDB1
Ensembl Gene ID:
ENSAPLG00000013908
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027511
750878 - 768802
17925
ENSAPLT00000014499
750878 - 768802
17925
ENSAPLT00000030008
750878 - 768802
17925