About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_761856_762346_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
761856 - 762346
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TGTCTGTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTTTTTGTGTCT
Flanking Amino Acid:
GCDCKDGCRDKSKCACHQLT
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
69.5
35.6
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
74.5
0.55
0.9
66.1
40.8
Minor 5ss
33.3
-1.9
3.5
42.7
39.1
Minor BPS
38.3
-0.8
3.7
70.47
41.3

Associated Gene:

Gene:
SETDB1
Ensembl Gene ID:
ENSAPLG00000013908
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030008
750878 - 768802
17925
ENSAPLT00000027511
750878 - 768802
17925
ENSAPLT00000014499
750878 - 768802
17925