Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_765653_766315_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

765653 - 766315

Intron Length:

663

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGCCTG

5'SS Class:

major

3'SS Sequence:

TGCCTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

CACTCATGAGAT

Flanking Amino Acid:

PSSFRHGLQGDVLTLSSSTD

Intron Amino Acid Position:

1100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

59.7

46.7

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

84.8

0.78

0.8

79.8

32.1

Minor 5ss

35.6

-1.6

3.1

39.3

Minor BPS

42.8

-0.4

56.84

44.8

Associated Gene:

Gene:

SETDB1

Ensembl Gene ID:

ENSAPLG00000013908

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030008

750878 - 768802

17925

ENSAPLT00000027511

750878 - 768802

17925

ENSAPLT00000014499

750878 - 768802

17925