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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_772798_772880_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
772798 - 772880
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCGTGCCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
TGCCGCTCACCC
Flanking Amino Acid:
LHDSSDYLLESAKMFNYAGW
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
70.6
0.46
0.9
65.8
36
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
42.7
-0.5
2.1
52.77
44.6

Associated Gene:

Gene:
CERS2
Ensembl Gene ID:
ENSAPLG00000014026
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014628
771964 - 776514
4551