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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_780513_780586_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
780513 - 780586
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
GAACCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GGGTGCTGAACC
Flanking Amino Acid:
ALALAYFLAKTSSPPKAAFI
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
67.2
0.39
1
58.6
37.7
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
50.7
0
1.9
61.03
43.7

Associated Gene:

Gene:
PRUNE1
Ensembl Gene ID:
ENSAPLG00000014429
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015030
779515 - 784171
4657