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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_780793_781002_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
780793 - 781002
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCACCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CCATCCCCATCT
Flanking Amino Acid:
LTLVDHHVLPSTDAALEEAV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
68.1
0.41
0.9
59.7
36.5
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
44.8
-0.3
2.1
61.77
47.5

Associated Gene:

Gene:
PRUNE1
Ensembl Gene ID:
ENSAPLG00000014429
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015030
779515 - 784171
4657