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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_781182_781248_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
781182 - 781248
Intron Length:
67

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGCCA
5'SS Class:
major
3'SS Sequence:
CTCCATCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGGTCTCCATCC
Flanking Amino Acid:
LDRATAALLHGTILLDSVNL
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
59.6
40.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
70.6
0.46
0.8
61.4
34.7
Minor 5ss
26.1
-2.7
3.1
31.7
42.2
Minor BPS
43.9
-0.4
2
56.04
42.3

Associated Gene:

Gene:
PRUNE1
Ensembl Gene ID:
ENSAPLG00000014429
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015030
779515 - 784171
4657