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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_781609_781690_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
781609 - 781690
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAGCAT
U12 Branch Point Sequence:
ACACCAGCATCT
Flanking Amino Acid:
AISGIYIDLETFLHRPNLLQ
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
45.4
-0.2
1.4
51.3
42.7
Major PPT
82.4
0.73
0.8
73.9
36.8
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
35.5
-1
2.2
50.41
42.8

Associated Gene:

Gene:
PRUNE1
Ensembl Gene ID:
ENSAPLG00000014429
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015030
779515 - 784171
4657