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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_781850_782022_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
781850 - 782022
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
CTGTGCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGCAT
U12 Branch Point Sequence:
ATGCCCCAGACA
Flanking Amino Acid:
YSQREALRSMVCQVLEEATT
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
45.4
-0.2
1.4
51.3
42.7
Major PPT
75.7
0.58
0.9
65.7
41
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
46.2
-0.3
2
59.05
40.4

Associated Gene:

Gene:
PRUNE1
Ensembl Gene ID:
ENSAPLG00000014429
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015030
779515 - 784171
4657