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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_796571_796931_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
796571 - 796931
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
TGACAAGTAACA
Flanking Amino Acid:
HTHIVELLIRNGADVNAKDM
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
82.2
0.72
0.7
80.7
24.5
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
43
-0.5
2.3
57.36
40.9

Associated Gene:

Gene:
GABPB2
Ensembl Gene ID:
ENSAPLG00000014691
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015320
795577 - 810275
14699