About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_817932_818383_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
817932 - 818383
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCACGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GCCACCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
GTCCCCAGAGCC
Flanking Amino Acid:
VLALFGTQPNSIPGSAVCAF
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
69.7
37.7
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
61.9
0.27
0.9
53.2
31
Minor 5ss
17.2
-3.8
4
29
43.5
Minor BPS
44.2
-0.4
1.9
55.12
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024016
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028934
817250 - 819527
2278