Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_818804_818881_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

818804 - 818881

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGGGTG

5'SS Class:

major

3'SS Sequence:

CCCGCGTCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

TGGGGGCTGATG

Flanking Amino Acid:

TLKYSSRWLQEPHFVQALPY

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.48

1.1

59.5

42.7

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

63.8

0.31

0.9

56.4

33.5

Minor 5ss

-2.2

3.8

37.1

47.5

Minor BPS

32.6

-1.5

2.4

34.98

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024016

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028934

817250 - 819527

2278