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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_819410_819518_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
819410 - 819518
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
TGCGACCGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
GTGCCCCCATCC
Flanking Amino Acid:
MGTDGCHNYIRVL
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
51.7
46.6
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
57.6
0.17
1
50.1
39
Minor 5ss
25.2
-2.9
3.1
30.3
42.8
Minor BPS
43
-0.5
2
54.14
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024016
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028934
817250 - 819527
2278