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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_843680_846095_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
843680 - 846095
Intron Length:
2416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGACGGA
5'SS Class:
major
3'SS Sequence:
GTTGTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TCTTTCTGAGTT
Flanking Amino Acid:
LCCSVKSFRRGSSTFKKSLT
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
56.6
42.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
76
0.59
1
72.2
42.7
Minor 5ss
33.7
-1.9
3.6
46.6
48.7
Minor BPS
58.1
0.33
1.7
76.16
41

Associated Gene:

Gene:
PIP5K1A
Ensembl Gene ID:
ENSAPLG00000015266
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030848
678435 - 858957
180523
ENSAPLT00000015942
678435 - 858957
180523