Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_854862_857694_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

854862 - 857694

Intron Length:

2833

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

AACTGCTTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTCTTATAAACT

Flanking Amino Acid:

GSGGLNSPANRSPPSVSPAA

Intron Amino Acid Position:

588

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

73.2

0.52

0.9

40.4

Minor 5ss

35.3

-1.7

3.4

50.1

46.5

Minor BPS

58.8

0.35

1.9

80.31

41.8

Associated Gene:

Gene:

PIP5K1A

Ensembl Gene ID:

ENSAPLG00000015266

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030848

678435 - 858957

180523