About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_87489_88383_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
87489 - 88383
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCGGACGCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CGCTCCCCACCC
Flanking Amino Acid:
HLVPVSLGNLIQGSHLSHTT
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.8
30.1
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
56.6
0.15
1
46.3
40.6
Minor 5ss
35.4
-1.7
3.3
48
41.4
Minor BPS
43.1
-0.5
2.1
52
45.1

Associated Gene:

Gene:
MEF2D
Ensembl Gene ID:
ENSAPLG00000007271
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007584
87158 - 110381
23224
ENSAPLT00000029901
87158 - 140670
53513
ENSAPLT00000027360
87158 - 123637
36480
ENSAPLT00000017385
87158 - 140670
53513