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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_880102_880188_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
880102 - 880188
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGTGGA
5'SS Class:
major
3'SS Sequence:
TCTCCCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
AGGTCCCAAACC
Flanking Amino Acid:
ATEMPRSPSSSPDPNEDNAA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.3
63.5
43.1
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
80.9
0.7
0.8
77.7
29.4
Minor 5ss
26.4
-2.7
3.1
32.8
41.9
Minor BPS
49.5
-0
2
62.4
42.7

Associated Gene:

Gene:
ZNF687
Ensembl Gene ID:
ENSAPLG00000002073
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002102
879762 - 889786
10025