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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_88622_90864_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88622 - 90864
Intron Length:
2243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCACGTTGACG
Flanking Amino Acid:
FSAMPTAYNTDYQLTSAELS
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.9
0.74
0.7
76.7
25.3
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
47.8
-0.3
2.2
54.92
46.5

Associated Gene:

Gene:
MEF2D
Ensembl Gene ID:
ENSAPLG00000007271
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029901
87158 - 140670
53513
ENSAPLT00000027360
87158 - 123637
36480
ENSAPLT00000017385
87158 - 140670
53513
ENSAPLT00000007584
87158 - 110381
23224