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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_892106_892636_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
892106 - 892636
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCGA
5'SS Class:
major
3'SS Sequence:
TCCTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
CCCCTGCCAACC
Flanking Amino Acid:
VVQIVEIMQQGSQLPCFHGS
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.7
45.5
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
79.3
0.66
0.8
72.7
32.1
Minor 5ss
29
-2.4
3.4
39
46.2
Minor BPS
35.6
-1.1
2.2
39.62
39.8

Associated Gene:

Gene:
PI4KB
Ensembl Gene ID:
ENSAPLG00000002437
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026646
890133 - 908533
18401
ENSAPLT00000002475
890133 - 908533
18401
ENSAPLT00000036083
890133 - 908533
18401