About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_893882_894551_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
893882 - 894551
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCA
5'SS Class:
major
3'SS Sequence:
TCCTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTCCTCACAT
Flanking Amino Acid:
ALKEPWQEKVRRIREGSPYG
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
63.2
42.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.7
0.69
0.7
75.6
26.6
Minor 5ss
29.6
-2.3
3.4
39.1
46.2
Minor BPS
55.4
0.25
2
77.48
44.6

Associated Gene:

Gene:
PI4KB
Ensembl Gene ID:
ENSAPLG00000002437
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026646
890133 - 908533
18401
ENSAPLT00000002475
890133 - 908533
18401
ENSAPLT00000036083
890133 - 908533
18401