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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_895295_895487_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
895295 - 895487
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TGCTGCTTCATT
Flanking Amino Acid:
VDDIVELQVELPEIHTNSCD
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
81.5
0.71
0.7
73.4
31.5
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
50.5
0.1
2.2
71.98
45.4

Associated Gene:

Gene:
PI4KB
Ensembl Gene ID:
ENSAPLG00000002437
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026646
890133 - 908533
18401
ENSAPLT00000002475
890133 - 908533
18401
ENSAPLT00000036083
890133 - 908533
18401