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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_90992_93286_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90992 - 93286
Intron Length:
2295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CCCCTTGTAACA
Flanking Amino Acid:
HHLTEDHLALNTQRLGVSQA
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
69
0.43
0.9
63.4
32.8
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
45.4
-0.3
2
50.92
41.6

Associated Gene:

Gene:
MEF2D
Ensembl Gene ID:
ENSAPLG00000007271
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029901
87158 - 140670
53513