Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_916486_916647_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

916486 - 916647

Intron Length:

162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TGTGTGTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

TCCCCCTCATCC

Flanking Amino Acid:

ADLVMAMVVSESTEKLHRDG

Intron Amino Acid Position:

423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.8

43.8

Major BPS

0.5

1.1

71.2

35.2

Major PPT

76.5

0.6

69.6

41.6

Minor 5ss

-2.2

3.2

46.1

Minor BPS

49.3

-0

1.9

59.93

Associated Gene:

Gene:

RFX5

Ensembl Gene ID:

ENSAPLG00000027459

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035677

915360 - 920177

4818

ENSAPLT00000046140

915360 - 919308

3949