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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_918347_918739_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
918347 - 918739
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGACCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GACCCTTTGACC
Flanking Amino Acid:
SVQNKVDSILQDVQKFSDND
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
67.8
0.4
0.9
62.4
33.2
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
59.5
0.28
1.3
60.81
38.5

Associated Gene:

Gene:
RFX5
Ensembl Gene ID:
ENSAPLG00000027459
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046140
915360 - 919308
3949