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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_921425_921590_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
921425 - 921590
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
CCGCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACCT
Flanking Amino Acid:
QSQPEPFVIQGRRVSGGPQM
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
67.9
0.4
0.9
60.8
35.2
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
44.1
-0.3
2.2
59.08
50

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002903
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002953
921059 - 927903
6845