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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_921684_921783_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
921684 - 921783
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CACTCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CCACCCTGAGCT
Flanking Amino Acid:
DTHRPRLVGQVFVGGSITKG
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
76
0.59
0.8
69.4
30.8
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
49
0
1.8
63.42
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002903
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002953
921059 - 927903
6845