Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_941891_942506_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

941891 - 942506

Intron Length:

616

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAA

U12 Branch Point Sequence:

CTTTTCCCAATG

Flanking Amino Acid:

WDKQFYPDLVKEGSVMLQVD

Intron Amino Acid Position:

401

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

83.5

27.8

Major BPS

63.1

0.33

1.2

72.7

34.3

Major PPT

88.5

0.87

0.6

87.2

23.3

Minor 5ss

37.7

-1.4

2.7

44.2

Minor BPS

48.8

-0.2

1.9

59.67

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010148

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026477

941656 - 949273

7618

ENSAPLT00000010591

941656 - 949887

8232