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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_944621_945296_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
944621 - 945296
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GCACTAATAATG
Flanking Amino Acid:
STVHRFYKTEKGNWAAEKVI
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
80
0.75
1
78.6
31
Major PPT
78.8
0.65
0.9
72.7
37.5
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
41.6
-0.7
1.7
40.4
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010148
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026477
941656 - 949273
7618
ENSAPLT00000010591
941656 - 949887
8232