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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_971393_980795_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
971393 - 980795
Intron Length:
9403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATTAAC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGCAA
U12 Branch Point Sequence:
TTTTGCTGTATT
Flanking Amino Acid:
DYNSVDKTATAGNPLVQQGG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
74.2
36.3
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
35.7
-1.6
2.7
37.6
40
Minor BPS
52.1
0.15
2.2
80.68
41.2

Associated Gene:

Gene:
POGZ
Ensembl Gene ID:
ENSAPLG00000009926
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010358
971242 - 993734
22493