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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_982046_982973_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
982046 - 982973
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTACTTGATCT
Flanking Amino Acid:
QTVRPITLVPAPGTQFVKPT
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.9
0.7
1
82.9
32.5
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
55.3
0.24
1.7
76.21
40.2

Associated Gene:

Gene:
POGZ
Ensembl Gene ID:
ENSAPLG00000009926
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010358
971242 - 993734
22493