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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_983154_984030_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
983154 - 984030
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTTCCTCAGTT
Flanking Amino Acid:
TVPQSQAQQQMSIASFVTVK
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
74.4
36
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82.8
0.74
0.9
80.7
31.3
Minor 5ss
36.2
-1.6
2.9
43
37.7
Minor BPS
62.6
0.47
1.8
81.4
40.2

Associated Gene:

Gene:
POGZ
Ensembl Gene ID:
ENSAPLG00000009926
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010358
971242 - 993734
22493