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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_984691_985080_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
984691 - 985080
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TACTGTTTAATA
Flanking Amino Acid:
VTEALRGHMCYCCPEMVEFL
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
74.4
36.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
38
-1.4
2.8
46.6
41.8
Minor BPS
60.3
0.32
1.7
67.71
39.6

Associated Gene:

Gene:
POGZ
Ensembl Gene ID:
ENSAPLG00000009926
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010358
971242 - 993734
22493